DIVERS

Genome-wide detection of Deep Intronic Variants with Effect on Recursive Splicing

Human transcripts with long introns can undergo recursive splicing (RS) - a stepwise splicing mechanism that seamlessly removes long intronic sequences by segmenting them into smaller fragments.
 
Deep intronic variants that disrupt RS could alter splicing, leading to intronic retentions with/without frameshifts and premature stops, thus resulting in deleterious and potentially pathogenic gene products, contributing to human diseases and traits.
 
DIVERS is a genome-wide computational method to systematically detect and interpret deep intronic variants that may impact RS. DIVERS identifies five types of RS-variants: "RS_AGGT_loss", "RS_BP_loss", "RS_3SS_gain", "RS_5SS_gain", and "RS_CRYP".
 
Reference: Zhang P. et al. Genome-wide detection of human deep intronic variants that affect recursive splicing. 2025.

Upload Variants (human GRCh38 genome assembly):

Upload your variants in VCF format, with only the first 5 tab-delimited columns: CHR, POS, ID, REF, ALT.
Limit your dataset < 1,000,000 variants, which typically requires ~40 seconds of processing time.
You can download a sample dataset here.



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Developer| Peng ZHANG   Ph.D.

Lab Head | Jean-Laurent CASANOVA   M.D., Ph.D.

Laboratory | Laboratory of Human Genetics of Infectious Diseases

Last Update| Feb 26, 2026